Professor Krzysztof Poterlowicz,Professor
Information about Professor Krzysztof Poterlowicz at the University of Bradford.
- School of Chemistry & Biosciences
(Faculty of Life Sciences) - Email:
- k.poterlowicz1@bradford.ac.uk
- Telephone:
- +44 1274 234737
Biography
Professor of Bioinformatics and Biomedical Data Science interested in advancing FAIR data management and computational method in biomedical domain through research and training.Director of Research for Computational and Data Driven Science at Faculty of Life Science, University of Bradford https://www.bradford.ac.uk/life-sciences/research-and-innovation/computational-and-data-driven-scien...ELIXIR UK Training Co-ordinator and Principal Investigator on UKRI funded ELIXIR-UK DaSH Fellowship that aims to create culture change with fellows producing and delivering FAIR data stewardship training and acting as ambassadors to embed research data management in their organisations https://elixiruknode.org/projects/elixir-uk-dash/
Research
My primary research focus revolves around the development and training of FAIR data management and computational methods within the biomedical domain.Recent projects include:ELIXIR-UK: FAIR Data Stewardship trainingReference hCNV datasets, use-case workflows and benchmarkingPredicting therapy responses in psoriasisCurrent team members:Xenia Perez-Sitja - Data Stewardship Community ManagerKhaled Jumah - Bioinformatics Research AssistantKatarzyna Kaminiecka -Lead Data Stewardship TrainerCurrent postgraduate research students:Katarzyna KaminieckaWafa AlsahlySirli AnnikoSumaia SabouniCheralynn (Shelly) SaundersIsabel Hyde (with University of Leeds)
Publications
There are 25 publications involving or that are attributed to Professor Krzysztof Poterlowicz.
Peer Reviewed Journal
| Title | Year | Publication name | Journal | Volume | Pages | Authors | Editors | ISSN | Publisher | DOI | Location |
|---|---|---|---|---|---|---|---|---|---|---|---|
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update | 2022 | Nucleic Acids Research | Alexander E Ostrovsky18, Alexandru Mahmoud18, Andrew J Lonie36, Anna Syme36, Anne Fouilloux33, Anthony Bretaudeau15, Anton Nekrutenko25, Anup Kumar35, Arthur C Eschenlauer34, Assunta D DeSanto25, Aysam Guerler18, Beatriz Serrano-Solano35, Bérénice Batut35, Björn A Grüning35, Bradley W Langhorst22, Bridget Carr18, Bryan A Raubenolt6, Cameron J Hyde26, Catherine J Bromhead36, Christopher B Barnett29, Coline Royaux21, Cristóbal Gallardo35, Daniel Blankenberg6, Daniel J Fornika2, Dannon Baker18, Dave Bouvier25, Dave Clements1, David A de Lima Morais39, David Lopez Tabernero35, Delphine Lariviere25, Engy Nasr35, Enis Afgan18, Federico Zambelli37, Florian Heyl35, Fotis Psomopoulos7, Frederik Coppens40, Gareth R Price38, Gianmauro Cuccuru35, Gildas Le Corguillé28, Greg Von Kuster25, Gulsum Gudukbay Akbulut25, Helena Rasche11, Hans-Rudolf Hotz13, Ignacio Eguinoa40, Igor Makunin26, Isuru J Ranawaka17, James P Taylor18, Jayadev Joshi6, Jennifer Hillman-Jackson25, Jeremy Goecks23, John M Chilton25, Kaivan Kamali25, Keith Suderman18, Krzysztof Poterlowicz4, Le Bras Yvan21, Lucille Lopez-Delisle12, Luke Sargent23, Madeline E Bassetti26, Marco Antonio Tangaro14, Marius van den Beek25, Martin Čech16, Matthias Bernt30, Matthias Fahrner35, Mehmet Tekman35, Melanie C Föll35, Michael C Schatz18, Michael R Crusoe41, Miguel Roncoroni40, Natalie Kucher18, Nate Coraor25, Nicholas Stoler25, Nick Rhodes38, Nicola Soranzo9, Niko Pinter35, Nuwan A Goonasekera36, Pablo A Moreno10, Pavankumar Videm35, Petera Melanie15, Pietro Mandreoli37, Pratik D Jagtap34, Qiang Gu23, Ralf J.M. Weber3, Ross Lazarus27, Ruben H.P. Vorderman20, Saskia Hiltemann11, Sergey Golitsynskiy18, Shilpa Garg19, Simon A Bray35, Simon L Gladman36, Simone Leo8, Subina P Mehta34, Timothy J Griffin34, Vahid Jalili5, Vandenbrouck Yves31, Victor Wen18, Vijay K Nagampalli6, Wendi A Bacon24, Willem de Koning11, Wolfgang Maier35, Peter J Briggs42 | 10.1093/nar/gkac247 | |||||||
| The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: awaiting peer review] | 2020 | David Salgado;Irina M. Armean;Michael Baudis;Sergi Beltran;Salvador Capella-Gutierrez;Denise Carvalho-Silva;Victoria Dominguez Del Angel;Joaquin Dopazo;Laura I. Furlong;Bo Gao;Leyla Garcia;Dietlind Gerloff;Ivo Gut;Attila Gyenesei;Nina Habermann;John M. Hancock;Marc Hanauer;Eivind Hovig;Lennart F. Johansson;Thomas Keane;Jan Korbel;Katharina B. Lauer;Steve Laurie;Brane Leskošek;David Lloyd;Tomas Marques-Bonet;Hailiang Mei;Katalin Monostory;Janet Piñero;Krzysztof Poterlowicz;Ana Rath;Pubudu Samarakoon;Ferran Sanz;Gary Saunders;Daoud Sie;Morris A. Swertz;Kirill Tsukanov;Alfonso Valencia;Marko Vidak;Cristina Yenyxe González;Bauke Ylstra;Christophe Béroud; | 10.12688/f1000research.24887.1 | ||||||||
| Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy | 2020 | Gigascience | 9 | giaa049 | Murat K., Grüning B., Poterlowicz P. W., Westgate G., Tobin D. J., Poterlowicz K. | 2047-217X | Oxford Academic | https://doi.org/10.1093/gigascience/giaa049 | |||
| Cellular sheddases are induced by Merkel cell polyomavirus small tumour antigen to mediate cell dissociation and invasiveness | 2019 | Nwogu, N.; Boyne, James R.; Dobson, S.J.; Poterlowicz, Krzysztof; Blair, G.E.; Macdonald, A.; Mankouri, J.; Whitehouse, A. | |||||||||
| Interplay of MicroRNA-21 and SATB1 in Epidermal Keratinocytes during Skin Aging. | 2019 | Journal of Investigative Dermatology | Ahmed MI;Pickup ME;Rimmer AG;Alam M;Mardaryev AN;Poterlowicz K;Botchkareva NV;Botchkarev VA; | 1523-1747 | 10.1016/j.jid.2019.04.022 | ||||||
| MCV-miR-M1 targets the host-cell immune response resulting in the attenuation of neutrophil chemotaxis | 2018 | Akhbari, Pouria; Tobin, Desmond J.; Poterlowicz, Krzysztof; Roberts, W.; Boyne, James R. | |||||||||
| The cellular chloride channels CLIC1 and CLIC4 contribute to virus-mediated cell motility | 2018 | Stakaityte, G.; Nwogu, N.; Lippiat, J.D.; Blair, G.E.; Poterlowicz, Krzysztof; Boyne, James R.; Macdonald, A.; Mankouri, J.; Whitehouse, A. | |||||||||
| Inhibition of HOX/PBX dimer formation leads to necroptosis in acute myeloid leukemia cells | 2017 | Oncotarget | Alharbi, R.A.;Pandha, H.S.;Simpson, G.R.;Pettengell, R.;Poterlowicz, K.;Thompson, A.;Harrington, K.;El-Tanani, M.;Morgan, R.; | 10.18632/oncotarget.20023 | |||||||
| 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells | 2017 | PLoS Genetics | 13 | Poterlowicz K.;Yarker J.;Malashchuk I.;Lajoie B.;Mardaryev A.;Gdula M.;Sharov A.;Kohwi-Shigematsu T.;Botchkarev V.;Fessing M. | 1553-7390 | 10.1371/journal.pgen.1006966 | |||||
| p63 Transcription Factor Regulates Nuclear Shape and Expression of Nuclear Envelope-Associated Genes in Epidermal Keratinocytes | 2017 | Journal of Investigative Dermatology | 137 | 2157 - 2167 | Rapisarda V.;Malashchuk I.;Asamaowei I.;Poterlowicz K.;Fessing M.;Sharov A.;Karakesisoglou I.;Botchkarev V.;Mardaryev A. | 0022-202X | 10.1016/j.jid.2017.05.013 | ||||
| Inhibition of HOX/PBX dimer formation leads to necroptosis in acute myeloid leukemia cells | 2017 | Alharbi, R.A.; Pandha, H.S.; Simpson, G.R.; Pettengell, R.; Poterlowicz, Krzysztof; Thompson, A.; Harrington, K.J.; El-Tanani, Mohamed; Morgan, Richard | |||||||||
| p63 transcription factor regulates nuclear shape and expression of nuclear envelope-associated genes in epidermal keratinocyte | 2017 | Rapisarda, Valentina; Malashchuk, Igor; Asamaowei, Inemo E.; Poterlowicz, Krzysztof; Fessing, Michael Y.; Sharov, A.A.; Karakesisoglou, I.; Botchkarev, Vladimir A.; Mardaryev, Andrei N. | |||||||||
| Cbx4 maintains the epithelial lineage identity and cell proliferation in the developing stratified epithelium | 2016 | Mardaryev, Andrei N.; Liu, B.; Rapisarda, Valentina; Poterlowicz, Krzysztof; Malashchuk, Igor; Rudolf, Jana; Sharov, A.A.; Jahoda, C.J.; Fessing, Michael Y.; Benitah, S.; Xu, G.; Botchkarev, Vladimir A. | |||||||||
| Circulating tumour DNA: a minimally invasive biomarker for tumour detection and stratification | 2016 | Surani, Arif A.; Poterlowicz, Krzysztof | |||||||||
| MicroRNA-214 controls skin and hair follicle development by modulating the activity of the Wnt pathway | 2014 | Ahmed, Mohammed I.; Alam, Majid A.; Emelianov, V.U.; Poterlowicz, Krzysztof; Patel, Ankit; Sharov, A.A.; Mardaryev, Andrei N.; Botchkareva, Natalia V. | |||||||||
| p63 and Brg1 control developmentally regulated higher-order chromatin remodelling at the epidermal differentiation complex locus in epidermal progenitor cells | 2014 | Mardaryev, Andrei N.; Gdula, Michal R.; Yarker, Joanne L.; Emelianov, V.U.; Poterlowicz, Krzysztof; Sharov, A.A.; Sharova, T.Y.; Scarpa, J.A.; Chambon, P.; Botchkarev, Vladimir A.; Fessing, Michael Y. | |||||||||
| Complex Changes in the Apoptotic and Cell Differentiation Programs during Initiation of the Hair Follicle Response to Chemotherapy | 2014 | Sharova, T.Y.; Poterlowicz, Krzysztof; Botchkareva, Natalia V.; Kondratiev, N.A.; Aziz, A.; Spiegel, J.H.; Botchkarev, Vladimir A.; Sharov, A.A. | |||||||||
| Bone morphogenetic protein signaling suppresses wound-induced skin repair by inhibiting keratinocyte proliferation and migration | 2014 | Lewis, Christopher J.; Mardaryev, Andrei N.; Poterlowicz, Krzysztof; Sharova, T.Y.; Aziz, A.; Sharpe, David T.; Botchkareva, Natalia V.; Sharov, A.A. | |||||||||
| Remodeling of Three-Dimensional Organization of the Nucleus during Terminal Keratinocyte Differentiation in the Epidermis | 2013 | Gdula, Michal R.; Poterlowicz, Krzysztof; Mardaryev, Andrei N.; Sharov, A.A.; Fessing, Michael Y.; Botchkarev, Vladimir A.; Peng, Yonghong | |||||||||
| Genome organizing function of SATB1 in tumor progression. | 2013 | Kohwi-Shigematsu, T.; Poterlowicz, Krzysztof; Ordinario, E.; Han, H.J.; Botchkarev, Vladimir A.; Kohwi, Y. | |||||||||
| Cigarette smoke-induced transgenerational alterations in genome stability in cord blood of human F1 offspring | 2012 | Laubenthal, Julian; Zlobinskaya, O.; Poterlowicz, Krzysztof; Baumgartner, Adolf; Gdula, Michal R.; Fthenou, E.; Keramarou, M.; Hepworth, S.J.; Kleinjans, J.C.; van Schooten, F.J.; Brunborg, G.; Godschalk, R.W.; Schmid, Thomas E.; Anderson, Diana | |||||||||
| Characterization of Changes in the Proteome in Different Regions of 3D Multicell Tumor Spheroids | 2012 | McMahon, Kelly M.; Volpato, Milène; Chi, H.Y.; Musiwaro, P.; Poterlowicz, Krzysztof; Peng, Yonghong; Scally, Andy J.; Patterson, Laurence H.; Phillips, Roger M.; Sutton, Chris W. | |||||||||
| Lhx2 differentially regulates Sox9, Tcf4 and Lgr5 in hair follicle stem cells to promote epidermal regeneration after injury | 2011 | Mardaryev, Andrei N.; Meier, N.; Poterlowicz, Krzysztof; Sharov, A.A.; Sharova, T.Y.; Ahmed, Mohammed I.; Rapisarda, Valentina; Lewis, Christopher J.; Fessing, Michael Y.; Ruenger, T.M.; Bhawan, J.; Werner, S.; Paus, R.; Botchkarev, Vladimir A. | |||||||||
| p63 regulates Satb1 to control tissue-specific chromatin remodeling during development of the epidermis | 2011 | Fessing, Michael Y.; Mardaryev, Andrei N.; Gdula, Michal R.; Sharov, A.A.; Sharova, T.Y.; Rapisarda, Valentina; Gordon, K.B.; Smorodchenko, A.D.; Poterlowicz, Krzysztof; Ferone, G.; Kohwi, Y.; Missero, C.; Kohwi-Shigematsu, T.; Botchkarev, Vladimir A. | |||||||||
| BMP signaling induces cell-type-specific changes in gene expression programs of human keratinocytes and fibroblasts | 2010 | Fessing, Michael Y.; Atoyan, R.; Shander, B.; Mardaryev, Andrei N.; Botchkarev, V.V. Jr; Poterlowicz, Krzysztof; Peng, Yonghong; Efimova, T.; Botchkarev, Vladimir A. |